On this page you can find information about the zoos in Japan who had giant pandas in their collections.
7 Japanese Zoos had the honour to have giant pandas as their residents:

Ueno Zoo, Tokyo, Japan
Lan Lan (1972-1979)
Kang Kang (1972-1980)
Huan Huan (1980-1997)
Fei Fei (1982-1994)
Chu Chu (1985)
Tong Tong (1986-2000)
You You (1988-1992)
Ling Ling (1992-2008)
Shuan Shuan (2003-2005)
Ri Ri (2011-present)
Shin Shin (2011-present)

Fukuoka City Zoological Garden, Fukuoka, Japan
Bao Ling (1980)
Hsan Hsan (1980)

Kobe Oji Zoo, Kobe, Japan
Zhai Zhai (1981)
Rong Rong (1981)
Tan Tan (2000-present)
Ko Ko I (2000-2002)
Ko Ko II (2002-2010)
unnamed cub (2007)
unnamed cub (2008)

Ikeda Zoo, Okayama, Japan
Qing Qing (1988)
Cheng Cheng (1988)

Hakodate, Japan
Qing Qing (1988)
Cheng Cheng (1988)

Adventure World, Wakayama, Japan
Qing Qing (1988-1989)
Cheng Cheng (1988-1989)
Ei Mei (1994-present)
You Hin (1994-1997)
Mei Mei (2000-2008)
Rau Hin (2000-present)
Yu Hin (2001-2004)
unnamed cub (2001)
Ryu Hin (2003-2007)
Shu Hin (2003-2007)
Kou Hin (2005-2010)
unnamed cub (2005)
Ai Hin (2006-present)
Mei Hin (2006-present)
Mei Hin (2008-present)
Ei Hin (2008-present)
Kai Hin (2010-present)
You Hin (2010-present)

Kofu Yuki Park Zoo, Kofu City, Japan
Cheng Cheng (1989)
Bing Bing (1989)